https://github.com/pnlbwh/dashboard is a lightweight dashboard for monitoring project progress
Developed by Tashrif Billah and Sylvain Bouix, Brigham and Women's Hospital (Harvard Medical School)
* This report was generated on Fri Mar 10 06:03:39 2023
[DIR] rootDir: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/ givenDir: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/ derivDir: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/ [CASELIST] caselist: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/report_caselist.txt [RAW] DICOMS: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/sourcedata/$_MR1.tar.gz T1w: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/anat/sub-$_ses-1_T1w.nii.gz T2w: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/anat/sub-$_ses-1_T2w.nii.gz AP_dir-98_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-98_dwi.nii.gz PA_dir-98_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-98_dwi.nii.gz AP_dir-99_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-99_dwi.nii.gz PA_dir-99_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-99_dwi.nii.gz AP_dir-107_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-107_dwi.nii.gz PA_dir-107_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/rawdata/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-107_dwi.nii.gz [DERIVATIVES] T1wXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/anat/sub-$_ses-1_desc-Xc_T1w.nii.gz T1wXcMask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/anat/sub-$_ses-1_desc-T2wXcMabsQcToT1wXc_mask.nii.gz T2wXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/anat/sub-$_ses-1_desc-Xc_T2w.nii.gz T2wXcMask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/anat/sub-$_ses-1_desc-T2wXcMabs_mask.nii.gz T2wXcMaskQc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/anat/sub-$_ses-1_desc-T2wXcMabsQc_mask.nii.gz freesurfer: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/anat/fs7.1.0/ AP_dir-98_dwiXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-98_desc-Xc_dwi.nii.gz PA_dir-98_dwiXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-98_desc-Xc_dwi.nii.gz AP_dir-99_dwiXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-99_desc-Xc_dwi.nii.gz PA_dir-99_dwiXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-99_desc-Xc_dwi.nii.gz AP_dir-107_dwiXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-107_desc-Xc_dwi.nii.gz PA_dir-107_dwiXc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-107_desc-Xc_dwi.nii.gz AP_dir-98_dwiXcUn: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-98_desc-XcUn_dwi.nii.gz PA_dir-98_dwiXcUn: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-98_desc-XcUn_dwi.nii.gz AP_dir-99_dwiXcUn: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-99_desc-XcUn_dwi.nii.gz PA_dir-99_dwiXcUn: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-99_desc-XcUn_dwi.nii.gz AP_dir-107_dwiXcUn: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-107_desc-XcUn_dwi.nii.gz PA_dir-107_dwiXcUn: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-107_desc-XcUn_dwi.nii.gz AP_dir-98_dwiXcUn_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-98_desc-dwiXcUnCNN_mask.nii.gz AP_dir-98_dwiXcUn_mask_qc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-98_desc-dwiXcUnCNNQc_mask.nii.gz PA_dir-98_dwiXcUn_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-98_desc-dwiXcUnCNN_mask.nii.gz PA_dir-98_dwiXcUn_mask_qc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-98_desc-dwiXcUnCNNQc_mask.nii.gz AP_dir-99_dwiXcUn_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-99_desc-dwiXcUnCNN_mask.nii.gz AP_dir-99_dwiXcUn_mask_qc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-99_desc-dwiXcUnCNNQc_mask.nii.gz PA_dir-99_dwiXcUn_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-99_desc-dwiXcUnCNN_mask.nii.gz PA_dir-99_dwiXcUn_mask_qc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-99_desc-dwiXcUnCNNQc_mask.nii.gz AP_dir-107_dwiXcUn_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-107_desc-dwiXcUnCNN_mask.nii.gz AP_dir-107_dwiXcUn_mask_qc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-AP_dir-107_desc-dwiXcUnCNNQc_mask.nii.gz PA_dir-107_dwiXcUn_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-107_desc-dwiXcUnCNN_mask.nii.gz PA_dir-107_dwiXcUn_mask_qc: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_acq-PA_dir-107_desc-dwiXcUnCNNQc_mask.nii.gz hcppipe: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/hcppipe dir-416_EdEp_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_dir-416_desc-XcUnEdEp_dwi.nii.gz dir-416_EdEp_dwi_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_dir-416_desc-dwiXcUnEdEp_mask.nii.gz dir-398_EdEp_dwi: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_dir-398_desc-XcUnEdEp_dwi.nii.gz dir-398_EdEp_dwi_mask: /data/pnl/U01_HCP_Psychosis/data_processing/BIDS/derivatives/pnlpipe/sub-$/ses-1/dwi/sub-$_ses-1_dir-398_desc-dwiXcUnEdEp_mask.nii.gz [TREE] level: 3
| item | exists (out of 293) | total size | |
|---|---|---|---|
| 1 | DICOMS | 28 | 81.63G |
| 2 | T1w | 289 | 6.77G |
| 3 | T2w | 288 | 5.95G |
| 4 | AP_dir-98_dwi | 5 | 1.07G |
| 5 | PA_dir-98_dwi | 5 | 1.07G |
| 6 | AP_dir-99_dwi | 279 | 64.43G |
| 7 | PA_dir-99_dwi | 277 | 63.54G |
| 8 | AP_dir-107_dwi | 284 | 71.4G |
| 9 | PA_dir-107_dwi | 284 | 70.79G |
| 10 | Total | 366.65G |
| item | exists (out of 293) | total size | |
|---|---|---|---|
| 1 | T1wXc | 289 | 6.84G |
| 2 | T1wXcMask | 288 | 88.29M |
| 3 | T2wXc | 288 | 6.09G |
| 4 | T2wXcMask | 87 | 16.41M |
| 5 | T2wXcMaskQc | 288 | 33.87M |
| 6 | freesurfer | 289 | 93.97G |
| 7 | AP_dir-98_dwiXc | 5 | 1.32G |
| 8 | PA_dir-98_dwiXc | 5 | 1.47G |
| 9 | AP_dir-99_dwiXc | 275 | 78.68G |
| 10 | PA_dir-99_dwiXc | 275 | 84.29G |
| 11 | AP_dir-107_dwiXc | 281 | 87.22G |
| 12 | PA_dir-107_dwiXc | 282 | 94.17G |
| 13 | AP_dir-98_dwiXcUn | 5 | 2.68G |
| 14 | PA_dir-98_dwiXcUn | 5 | 3.0G |
| 15 | AP_dir-99_dwiXcUn | 275 | 153.11G |
| 16 | PA_dir-99_dwiXcUn | 275 | 165.78G |
| 17 | AP_dir-107_dwiXcUn | 281 | 168.85G |
| 18 | PA_dir-107_dwiXcUn | 282 | 184.64G |
| 19 | AP_dir-98_dwiXcUn_mask | 5 | 303.93K |
| 20 | AP_dir-98_dwiXcUn_mask_qc | 5 | 275.6K |
| 21 | PA_dir-98_dwiXcUn_mask | 5 | 303.91K |
| 22 | PA_dir-98_dwiXcUn_mask_qc | 5 | 202.08K |
| 23 | AP_dir-99_dwiXcUn_mask | 274 | 16.16M |
| 24 | AP_dir-99_dwiXcUn_mask_qc | 238 | 13.01M |
| 25 | PA_dir-99_dwiXcUn_mask | 273 | 16.46M |
| 26 | PA_dir-99_dwiXcUn_mask_qc | 237 | 11.39M |
| 27 | AP_dir-107_dwiXcUn_mask | 280 | 16.56M |
| 28 | AP_dir-107_dwiXcUn_mask_qc | 242 | 13.37M |
| 29 | PA_dir-107_dwiXcUn_mask | 281 | 16.87M |
| 30 | PA_dir-107_dwiXcUn_mask_qc | 242 | 13.23M |
| 31 | hcppipe | 287 | 721.94G |
| 32 | dir-416_EdEp_dwi | 269 | 18.33K |
| 33 | dir-416_EdEp_dwi_mask | 269 | 17.25K |
| 34 | dir-398_EdEp_dwi | 4 | 0.2K |
| 35 | dir-398_EdEp_dwi_mask | 4 | 0.18K |
| 36 | Total | 1854.3G |